PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Phvul.009G043800.1
Common NamePHAVU_009G043800g
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Phaseolus
Family C2H2
Protein Properties Length: 251aa    MW: 28612.1 Da    PI: 9.2119
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Phvul.009G043800.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H218.36.4e-066991123
                        EEETTTTEEESSHHHHHHHHHHT CS
             zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                        ++C++C+k Fs++  L  H++ H
  Phvul.009G043800.1 69 FSCNYCNKEFSTSQALGGHQNAH 91
                        89******************988 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576672.57E-76697No hitNo description
Gene3DG3DSA:3.30.160.601.9E-56795IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PfamPF139126.9E-76993IPR007087Zinc finger, C2H2
PROSITE profilePS5015711.8846996IPR007087Zinc finger, C2H2
PROSITE patternPS0002807191IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 251 aa     Download sequence    Send to blast
MKYCEKKSFV PHQNQGSNSN TRVLVDFTKM SKDGDITQES SDEKVIDSSI SHSKGAAKKN  60
TKVVKTKIFS CNYCNKEFST SQALGGHQNA HKQERVVAKH CQGFDVRGLT QFPYYPYYSS  120
FYNSHSLHGR SFNEALGLRS DSMIHKHPRT SRYEHPLFKR DHEKLIFDGF RNMKNDYPII  180
KSDATLSLKL EDGNDRINLE TLTLFTNDAT ISSSQLRKMT TLPTTEIVDH YVPKEISNEP  240
SYNLDLSLKL *
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007136422.10.0hypothetical protein PHAVU_009G043800g
TrEMBLV7AW140.0V7AW14_PHAVU; Uncharacterized protein
STRINGGLYMA06G14783.12e-77(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF18223074
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G10970.19e-13C2H2 family protein